PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA023597-PA
Common NameOsI_24444
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family DBB
Protein Properties Length: 308aa    MW: 31971.7 Da    PI: 4.9316
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA023597-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box192.8e-06447542
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                       C+ +  +++   C  ++  lC  C    H+       H++ pl
  BGIOSGA023597-PA  4 QCDVCAAEPAAVLCCADEAALCSACDRRVHRAnrlaskHRRLPL 47
                      7*****************************76889999988775 PP

2zf-B_box26.41.4e-0863104338
          zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                       ++ C+ + ek+   fC +++  lC+dC + +H+       Ht
  BGIOSGA023597-PA  63 APLCDVCREKRGLVFCVEDRAILCADCDEPIHSAndltakHT 104
                       579*****************************6577777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.267147IPR000315B-box-type zinc finger
SMARTSM003366.9E-8147IPR000315B-box-type zinc finger
CDDcd000219.42E-6347No hitNo description
PfamPF006434.1E-5447IPR000315B-box-type zinc finger
PROSITE profilePS501199.55661108IPR000315B-box-type zinc finger
SMARTSM003366.2E-1761108IPR000315B-box-type zinc finger
CDDcd000211.91E-764108No hitNo description
PfamPF006435.7E-664105IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MRVQCDVCAA EPAAVLCCAD EAALCSACDR RVHRANRLAS KHRRLPLVHP SSSSSGDGGA  60
AAAPLCDVCR EKRGLVFCVE DRAILCADCD EPIHSANDLT AKHTRFLLVG AKLSPAALAE  120
QPLPSSDCSS DDDAAAAATE EEYHSSAAST GAAVSAPLDA SSNGAGGGGG VGGSSISDYL  180
TTICPGWRVE DLLPDDDAFA AAAAQAGKEK DERVPFLDAD LFDVVAGRPE KKGGSWAPHV  240
PHLPAWCLDE VPVIVAASAA PAATPVKAKQ GHVRDNHWSD SDAFAVPEFS PPPPPAKRAR  300
PSSQFWCF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.33960.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329911660.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8316150.0CT831615.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110A13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641370.10.0PREDICTED: B-box zinc finger protein 20 isoform X1
TrEMBLB8B2H40.0B8B2H4_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA023597-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121002430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.12e-39salt tolerance homolog2